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    Home » Paleo Pumpkin Zucchini Muffins (or Bread)

    Paleo Pumpkin Zucchini Muffins (or Bread)

    Published: Oct 7, 2018 · Modified: Oct 6, 2022 by Laura · This post may contain affiliate links.

    Jump to Recipe

    This Paleo pumpkin zucchini muffins recipe is a healthy breakfast that's easy to make. These muffins are gluten-free, dairy-free and can easily be made into healthy pumpkin zucchini bread!

    Front view of 5 Paleo Pumpkin Zucchini Muffins with chocolate chips

    Is anyone else teetering between sadness that summer is ending and elation about the beginning of fall? I feel like a great battle of emotions is taking place in my heart right now. I love splashing in the pool, and hiking in the brisk fall air. Both flip flops and a warm pair of boots make my feet sing. Am I ready to give up tomatoes and watermelon for apples and pomegranates?! Oh the war within!

    Since making decisions is completely overrated (and something I am nearly incapable of doing), I created this healthy Pumpkin Zucchini Muffin recipe so you don't have to! Today summer and fall collide to make something beautiful...Paleo Pumpkin Zucchini Muffins! Can't decide between summer and fall,  no problem at all!

    Lets embrace the summer-fall duality with this muffin recipe. Loaded with veggies, these muffins are gluten-free, dairy-free and paleo!

    overhead view of 8 Paleo Pumpkin Zucchini Muffins or Bread

    Paleo Pumpkin Zucchini Muffins: Ingredients & Substitutions 

    I really do not recommend making any substitutions in this recipe! Especially do not tamper with the kind and amount of flour. Paleo baking is a fine art, and I changing the flours in any way may result in a not-so-great muffin!

    Overhead view of the ingredients in this healthy pumpkin zucchini muffins recipe
    • Pumpkin puree. Homemade pumpkin puree or canned can be used in this recipe. Please be sure to use a pure variety that has only one ingredient: pumpkin. Do not use pumpkin pie filling.
    • Coconut sugar. Any granulated sugar works well in this recipe. Just be sure to choose a variety that complies with your dietary needs.
    • Coconut oil. Butter or ghee are tasty substitutes for coconut oil.
    • Chocolate chips. These can be left out entirely. Also feel free to substitute your favorite chip variety, cinnamon, white chocolate, butterscotch, caramel, peanut butter, the sky's the limit! For a paleo variety try these Enjoy Life Foods morsels.
    • Pumpkin Pie Spice. Use store bought or make your own with this recipe: homemade pumpkin pie spice.
    front view of a stack of three Pumpkin Zucchini Muffins, the top one has a bite taken out of it

    How to Make Pumpkin Zucchini Muffins

    These pumpkin zucchini muffins are a breeze to make! So let's walk through the process together

    Use a Vitamix & Blend the Wet Ingredients

    These muffins are best when the batter is made in the Vitamix (surprise surprise)! Whenever you are making batter in the Vitamix, it's important to start by adding your wet ingredients first!

    Start by adding the pumpkin and the zucchini and blending until smooth. This will ensure the zucchini is completely blended (see the photo on the right below, it's undetectable.

    two photos showing How to make Pumpkin Zucchini Muffins

    Add the dry ingredients 

    Next, add the dry ingredients and blend until combined! As you can see in the middle photo, the batter gets pretty thick (which is how it should be)! So you may need to scrape the sides and keep blending until the mixture is homogenous (uniform throughout).

    two photos showing How to make Pumpkin Zucchini Muffins

    3. Stir in the Chocolate Chips

    Chocolate chips are optional (I guess)! But if you would like to add them be sure to stir them into the batter by hand (do not blend).

    two photos showing How to make Pumpkin Zucchini Muffins

    Fill the muffin pan 

    I recommend using a nonstick muffin tin to bake these Pumpkin Zucchini Muffins. Such a pan crisps the outsides beautifully. Please do not use muffin liners because they are difficult to remove from the baked muffins/

    Grease the muffin pan well using your favorite method. Use a ¼ cup measuring cup to fill the wells of a standard muffin tin with the pumpkin zucchini muffin batter. The wells should be filled about ¾ full to prevent the muffins from overflowing!

    After filling each well, I like to put a few extra chocolate chips on top for good measure.

    Up close overhead view of a muffin pan filled with Pumpkin Zucchini Muffins batter before being baked.

    Bake the Pumpkin Zucchini Muffins

    Once you have finished filling the muffin tin, bake the Pumpkin Zucchini Muffins in the preheated oven. The muffins are done when the tops have set and spring back when touched!

    overhead view of a muffin pan with Pumpkin Zucchini Muffins in it just after baking

    Let cool & remove

    Let the muffins cool in the pan for about 5 minutes before removing them and transferring them to a wire rack to cool the rest of the way. If they are removed too early they will likely fall apart in the transferring process.

    Use a spoon or knife to release the edges of the pumpkin zucchini muffins from the pan before removing them completely. This will ensure they hold their shape well!

    Store/freeze

    Store leftovers in an airtight container in the refrigerator for up to 1 week.

    These healthy Pumpkin Zucchini Muffins also freeze well. Make sure they are cooled completely, then put them in a ziplock bag or freezer-friendly container and store them in the freezer for up to 2 months.

    To eat, simply reheat in the microwave for about 30-60 seconds (depending on the number of muffins), or warm in the oven!

    Up close overhead view of Pumpkin Zucchini Muffins on a cooling rack

    Recipe FAQs

    Do I need to shred the zucchini?

    I just chopped the zucchini into large pieces because the Vitamix makes it undetectable. However, for measuring purposes I recommend chopping or shredding the zucchini so you use the correct amount.

    Can I make this into pumpkin zucchini bread?

    This recipe can easily be made into bread. Simply bake the batter in a 9x5" or 8x3" pan for 35-45 minutes at 350 degrees F!
    I recommend lining the loaf pan with aluminum foil and then greasing the foil for easy removal! Let the bread cool in the pan for at least 10 minutes before removing.

    Overhead view of a Pumpkin Zucchini Muffin with a bite taken out of it so you can see the melty chocolate on the inside

    If you make and love our recipes, it would mean so much to me if you would leave a comment and rating! And don't forget to follow along with us on Instagram, Pinterest, Facebook, and Youtube - be sure to tag @joyfoodsunshine and use the hashtag #joyfoodsunshine so we can your creations!

    Paleo Pumpkin Zucchini Muffins Recipe

    Laura
    This Paleo pumpkin zucchini muffins recipe is a healthy breakfast that's easy to make. These muffins are gluten-free, dairy-free and can easily be made into healthy pumpkin zucchini bread!
    4.95 from 17 votes
    Print Recipe Pin Recipe Save Recipe Saved!
    Prep Time 5 mins
    Cook Time 25 mins
    Total Time 30 mins
    Course Breakfast, Snack
    Cuisine American
    Servings 12 muffins
    Calories 126 kcal

    Equipment

    • Vitamix blender
    • measuring spoons
    • measuring cups
    • spatula
    • standard muffin pan

    Ingredients
     
     

    • ½ cup coconut flour
    • ¼ cup almond flour
    • 2 tsp cinnamon
    • 1 tsp pumpkin pie spice
    • 1 tsp baking soda
    • ¼ tsp baking powder
    • ½ tsp sea salt
    • 1 cup pumpkin puree
    • 1 cup unpeeled finely shredded zucchini (about 1 medium zucchini)
    • ⅓ cup coconut sugar
    • 1 tsp vanilla extract
    • 2 TBS coconut oil
    • ½ tsp apple cider vinegar
    • 4 eggs
    • ¼ cup chocolate chips or cinnamon chips*
    Prevent your screen from going dark

    Instructions
     

    • Preheat the oven to 375 degrees F. Grease a standard muffin pan, set aside.
    • Combine coconut flour, almond flour, cinnamon, pumpkin pie spice baking soda, baking powder and salt in a small bowl, set aside.
    • Put zucchini, pumpkin, coconut sugar, and coconut oil into your blender (Vitamix) or food processor and blend until smooth.
    • Add the vanilla and apple cider vinegar and blend until combined.
    • Add the dry ingredients and blend until combined.
    • Add eggs all at once and blend until just combined.
    • Mix in chocolate chips (or cinnamon chips) by hand.
    • Scoop the batter into the prepared muffin pan.
    • Bake for 20-25 minutes until a toothpick inserted into the center of each muffin comes out clean. (To make into bread bake in 9x5” loaf pan for 35-40 minutes!)

    Video

    Notes

    Ingredient substitutions

    • Pumpkin puree. Homemade pumpkin puree or canned can be used in this recipe. Please be sure to use a pure variety that has only one ingredient: pumpkin. Do not use pumpkin pie filling.
    • Coconut sugar. Any granulated sugar works well in this recipe. Just be sure to choose a variety that complies with your dietary needs.
    • Coconut oil. Butter or ghee are tasty substitutes for coconut oil.
    • Chocolate chips. These can be left out entirely. Also feel free to substitute your favorite chip variety, cinnamon, white chocolate, butterscotch, caramel, peanut butter, the sky's the limit! For a paleo variety try these Enjoy Life Foods morsels.
    • Pumpkin Pie Spice. Use store bought or make homemade pumpkin pie spice!
    •  

    To make into bread: 

    These healthy pumpkin muffins can easily be made into pumpkin zucchini bread! Simply bake the batter in a 9x5" or 8x3" pan for 35-45 minutes at 350 degrees F! 

    Store/freeze

    Store leftovers in an airtight container in the refrigerator for up to 1 week.
    These healthy Pumpkin Zucchini Muffins also freeze well. Make sure they are cooled completely, then put them in a ziplock bag or freezer-friendly container and store them in the freezer for up to 2 months.
    To eat, simply reheat in the microwave for about 30-60 seconds (depending on the number of muffins), or warm in the oven!

    Nutrition

    Serving: 1muffinCalories: 126kcalCarbohydrates: 13.7gProtein: 4gFat: 6.8gSaturated Fat: 3.4gPolyunsaturated Fat: 0.4gMonounsaturated Fat: 1gCholesterol: 62mgSodium: 184mgPotassium: 77mgFiber: 3.7gSugar: 8gVitamin A: 2750IUVitamin C: 1.4mgCalcium: 30mgIron: 0.8mg
    Tried this recipe?Let us know how it was!

    More delicious recipes! 

    I have lots of delicious ideas for you if you're looking to make something with pumpkin, besides this paleo pumpkin bread of course!

    • Pumpkin baked oatmeal is one of our favorite fall breakfasts! 
    • Baked pumpkin donuts are another yummy breakfast for special days!
    • This no-bake vegan pumpkin cheesecake is great if you have people in your family with food allergies! Also these paleo pumpkin muffins, and these mini vegan pumpkin pies!
    • Make a batch of this pumpkin coffee creamer. It's healthy and delicious! 
    • This pumpkin smoothie tastes like a liquid pumpkin pie but it's so much healthier and only takes 5 minutes to make!
    • This literally the best pumpkin cake with cream cheese frosting I've ever had - ever. 
    • Spinach Banana muffins (Like a green smoothie in muffin form! gluten-free)
    • Paleo Zucchini Banana Muffins (Where this recipe was adapted from! Paleo, gluten-free & dairy-free)
    • Double Chocolate Zucchini Muffins (Packed full of zucchini and protein from Greek yogurt! Gluten-free)

    This post contains affiliate links, which means that if you purchase a product through a link you clicked on here, I receive a portion of the sale. Thank you for supporting JoyFoodSunshine! 

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    Reader Interactions

    Comments

    1. Chelsea

      October 03, 2019 at 7:17 am

      Have you tried to replace the coconut sugar with mashed banana?

      Reply
    2. Vickie Miller

      September 15, 2019 at 9:14 am

      Has anyone added nuts yet, instead of chocolate?

      Reply
    3. Angellina Francis

      September 12, 2019 at 4:05 pm

      I only have a food processor, will that work in replacement of a blender?

      Reply
      • Laura

        September 12, 2019 at 4:07 pm

        Yes!

        Reply
    4. Jenna

      September 08, 2019 at 1:54 pm

      5 stars
      We're on our second double batch of these muffins! We used the food processor to make them and it worked perfectly! Such a breeze and sooo good! We're mixing cinnamon and chocolate chips and they sound tasty!

      Reply
    5. Caroline

      July 03, 2019 at 9:59 am

      Do you think the recipe would still work if substituted the coconut sugar with honey or maple syrup?

      Reply
      • Laura

        July 04, 2019 at 6:57 am

        It might be a little too moist, you might want to add an extra TBS or two of almond flour if you try that substitution.

        Reply
        • Caroline

          July 04, 2019 at 3:10 pm

          Thank you!

        • Ashley

          September 21, 2019 at 2:32 pm

          How did this end up turning out? I would love to try with that same substitution!

    6. Fadia

      December 04, 2018 at 8:28 am

      5 stars
      Those are by far the best “healthy” muffins I made so far. I make a batch and send one a day in my daughters lunch box and it’s the only muffin she never return home.

      Reply
      • Laura

        December 04, 2018 at 10:10 am

        I'm so glad you and your daughter enjoy them Fadia!

        Reply
    7. judy herington

      December 02, 2018 at 1:00 pm

      5 stars
      Thanks for another gf recipe. I love how detailed all your recipes and comments are. Will try this soon!

      Reply
      • Laura

        December 02, 2018 at 1:16 pm

        Thank you Judy! We love these muffins!

        Reply
    8. Adreanne

      November 30, 2018 at 12:20 pm

      5 stars
      These are amazing!! Pumpkin + chocolate (and zucchini)...one of the best combos! It's either muffins or smoothies for breakfast every day, so I loved this pumpkin version! Will make again.

      Reply
      • Laura

        November 30, 2018 at 2:32 pm

        I'm loving that breakfast routine!

        Reply
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    About Laura

    I’m Laura, a former chemistry teacher turned homeschooling mom of six beautiful babies! I create simple and delicious recipes that are tested and perfected to make cooking and baking joyful and fun!

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